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US20090298702 |
NUCLEIC ACID SEQUENCING USING A COMPACTED CODING TECHNIQUE
Methods and apparatuses for nucleic aced sequencing using a compacted code technique are disclosed. In one embodiment, a method includes providing a nucleic acid to be sequenced, determining the...
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US20090299650 |
SYSTEMS AND METHODS FOR FILTERING TARGET PROBE SETS
Systems and methods for using the same to filter target probes sets are provided. In certain embodiments, the system and methods are implemented on a web-based platform. Also provided are computer...
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US20090292482 |
Methods and Systems for Generating Cell Lineage Tree of Multiple Cell Samples
A method of generating a cell lineage tree of a plurality of cells of an individual is provided. The method comprising: (a) determining at least one genotypic marker for each cell of the plurality...
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US20090287420 |
Method and system to characterize transcriptionally active regions and quantify sequence abundance for large scale sequencing data
This invention provides a quantitative method to determine transcriptionally active regions and quantify sequence abundance from large scale sequencing data. The invention also provides a system...
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US20090240441 |
SYSTEM AND METHOD FOR ANALYSIS AND PRESENTATION OF GENOMIC DATA
A method for analyzing genomic data that includes obtaining genomic sequence information from an anonymous individual, processing the information via a secure computerized algorithm, and presenting...
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US20090226891 |
ENCODED SOLID SUPPORTS FOR BIOLOGICAL PROCESSING AND ASSAYS USING SAME
Combinations, called matrices with memories, of matrix materials with remotely addressable or remotely programmable recording devices that contain at least one data storage unit are provided. The...
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US20090226914 |
METHODS AND PRODUCTS TO TARGET, CAPTURE AND CHARACTERIZE STEM CELLS
A method for identifying cancer stem cells, comprises reacting a plurality of cells comprising cancer stem cells with an anti-nucleolin agent to bind the anti-nucleolin agent to the cancer stem...
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US20090222216 |
System and Method to Improve Accuracy of a Polymer
The sequencing of individual monomers (e.g., a single nucleotide) of a polymer (e.g., DNA, RNA) is improved by reducing the motion of the polymer due to thermally-driven diffusion to reduce the...
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US20090208939 |
Identification of Molecular Diagnostic Markers for Endometriosis in Blood Lymphocytes
The invention comprises a method of identifying or predicting the predisposition to endometriosis in a female subject comprising determining the level of gene expression of at least one...
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US20090176215 |
GENE METHYLATION IN PROSTATE CANCER DIAGNOSIS
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with prostate cancer. The invention further provides...
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US20090170088 |
GENE METHYLATION IN CANCER DIAGNOSIS
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with cancer. The invention further provides methods of...
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US20090170087 |
Gene Methylation in Cervical Cancer Diagnosis
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with cervical cancer. The invention further provides...
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US20090170086 |
Gene Methylation In Esophageal Cancer Diagnosis
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with esophageal cancer. The invention further provides...
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US20090164135 |
QUATERNIONIC ALGEBRA APPROACH TO DNA AND RNA TANDEM REPEAT DETECTION
A method of detecting and outputting tandem repeats in a sequence of symbols comprising a) mapping the symbols to quaternions; b) constructing a Quaternionic Periodicity Transform (QPT); c)...
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US20090150084 |
GENOME IDENTIFICATION SYSTEM
The present invention belongs to the field of genomics and nucleic acid sequencing. It involves a novel method of sequencing biological material and real-time probabilistic matching of short...
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US20090142331 |
Method for the Production of Bio-Active Substances from the Novel Actinomycete TAXA MAR3A, MAR3B And MAR4 Belonging to the Family Treptomycetaceae
This invention provides a method for the isolation and identification of marine actinomycetes tentatively named MAR3A and MAR3B and the use of these groups as a source of new biologically active...
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US20090137505 |
Method for Predicting and Identifying Target mRnas Controlled By Functional Rnas and Method of Using the Same
It is intended to identify or estimate miRNAs and one or more target genes (target mRNAs) targeted thereby. A method of predicting or identifying miRNAs and one or more target mRNAs targeted...
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US20090138209 |
PROGNOSTIC APPARATUS, AND PROGNOSTIC METHOD
A computer-readable storage medium storing a program causing a computer to execute, (a) extracting prediction factors from gene expression data, (b) predicting based on gene expression data of a...
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US20090125248 |
System, Method and computer program product for integrated analysis and visualization of genomic data
Described is a system for analysis and visualization of genomic data. The system allows a user to select at least one individual sample. The sample has chromosomal data representing a genome with a...
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US20090125244 |
BROAD-BASED NEUROTOXIN-RELATED GENE MUTATION ASSOCIATION FROM A GENE TRANSCRIPT TEST
Broad-based genetic mutation association gene transcript test and data structure. Genetic mutation considerations for this unique test include a custom set of genetic sequences associated in...
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US20090125246 |
Method and Apparatus for the Determination of Genetic Associations
Procedure and tool to determine genetic associations. The method allows to identify, without the need for predictive hypothesis, genes that influence, either individually or preferably...
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US20090125247 |
GENE EXPRESSION MARKERS OF RECURRENCE RISK IN CANCER PATIENTS AFTER CHEMOTHERAPY
The present invention relates to genes, the expression levels of which are correlated with likelihood of breast cancer recurrence in patients after tumor resection and chemotherapy.
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US20090125245 |
Methods For Rapid Forensic Analysis Of Mitochondrial DNA
The present invention provides methods for rapid forensic analysis of mitochondrial DNA by amplification of a segment of mitochondrial DNA containing restriction sites, digesting the mitochondrial...
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US20090117556 |
Association of Single Nucleotide Polymorphisms in the CBFA2T1 and DECR1 Genes with Performance and Carcass Merit of Beef Cattle
Aspects of the present invention also provide novel compositions and methods based on novel CBFA2T1 and/or DECR1 single nucleotide polymorphisms selected from the group consisting of CBFA2T1 SNP1,...
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US20090117562 |
Method and kit for diagnosing Autism using gene expression profiling
This invention relates to DNA microarray technology, and more specifically to methods and kits for identifying autism and autism spectrum disorders in humans.
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US20090119022 |
Emericella Nidulans Genome Sequence On Computer Readable Medium and Uses Thereof
The present invention relates to nucleic acid sequences from the filamentous fungus, Emericella nidulans ( Aspergillus nidulans ) and, in particular, to genomic DNA sequences. The invention...
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US20090105962 |
METHODS AND SYSTEMS FOR IDENTIFYING MOLECULAR PATHWAY ELEMENTS
The present invention provides methods and systems useful in determining molecular pathways and elements of molecular pathways. In particular, the present invention provides for the discovery of...
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US20090105961 |
METHODS OF NUCLEIC ACID IDENTIFICATION IN LARGE-SCALE SEQUENCING
The present invention provides methods for determining a base probability in a target nucleic acid within an experimental data set. The methods of the invention provide specific methods of...
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US20090104601 |
GENETIC DIAGNOSIS USING MULTIPLE SEQUENCE VARIANT ANALYSIS
The present invention is in the field of nucleic acid-based genetic analysis. More particularly, it discloses novel insights into the overall structure of genetic variation in all living species....
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US20090099789 |
Methods and Systems for Genomic Analysis Using Ancestral Data
The present disclosure provides methods and systems for assessing an individual's genotype correlations to a phenotype by analyzing the individual's genomic profile and using ancestral data to...
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US20090098533 |
Methods and kits for investigating cancer
The invention provides novel compositions, methods and uses, for the prediction, diagnosis, prognosis, prevention and treatment of malignant neoplasia and breast cancer. The invention further...
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US20090092628 |
Conserved-element vaccines and methods for designing conserved-element vaccines
Embodiments of the present invention include conserved-element vaccines and methods for designing and producing conserved-element vaccines. A conserved-element vaccine (“CEVac”) is a...
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US20090092991 |
Assays, methods and systems for predicting follicular lymphoma outcome
Assays, kits, methods and systems for predicting outcome in patients with follicular lymphoma based upon measurement of one or more phenomenologically competitive or synergistic gene pairs or a set...
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US20090082975 |
METHOD OF SELECTING AN ACTIVE OLIGONUCLEOTIDE PREDICTIVE MODEL
The present invention provides a method of identifying a predictor of antisense oligonucleotide activity by identifying properties of oligonucleotides, evaluating oligonucleotide activity of the...
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US20090075263 |
GENE METHYLATION IN OVARIAN CANCER DIAGNOSIS
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with ovarian cancer. The invention further provides...
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US20090075264 |
GENE METHYLATION IN LIVER CANCER DIAGNOSIS
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with liver cancer. The invention further provides...
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US20090076734 |
Gene Signature for the Prediction of Radiation Therapy Response
Described are mathematical models and method, e.g., computer-implemented methods, for predicting tumor sensitivity to radiation therapy, which can be used, e.g., for selecting a treatment for a...
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US20090075265 |
GENE METHYLATION IN THYROID CANCER DIAGNOSIS
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with thyroid cancer. The invention further provides...
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US20090075262 |
Gene Methylation In Endometrial Cancer Diagnosis
The present invention provides DNA biomarker sequences that are differentially methylated in samples from normal individuals and individuals with endometrial cancer. The invention further provides...
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US20090076735 |
Method, system and software arrangement for comparative analysis and phylogeny with whole-genome optical maps
The present invention provides a method for organizing genomic information from multiple organisms. In one embodiment of the invention, phylogenetic trees can be constructed for the organisms. The...
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US20090048785 |
Methods And Systems For Analyzing Biological Samples
Methods, computer readable storage media and systems which can be used for analyzing labeled biological samples, identifying chromosomal aberrations, identifying genetically abnormal cells and/or...
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US20090037118 |
METHODS FOR PREDICTING THREE-DIMENSIONAL STRUCTURES FOR ALPHA HELICAL MEMBRANE PROTEINS AND THEIR USE IN DESIGN OF SELECTIVE LIGANDS
A method for practical prediction of the three-dimensional structure of α-helical membrane proteins (HMPs) is described. The method allows one to predict the binding site and structure for...
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US20090035764 |
Methods and systems for evaluating CGH candidate probe nucleic acid sequences
Methods of evaluating candidate CGH probe nucleic acid sequences are provided. Aspects of the methods include providing a candidate CGH probe nucleic acid sequence for a target sequence of a copy...
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US20090037117 |
Differential Dissociation and Melting Curve Peak Detection
Systems and methods are provided for processing a melting or dissociation curve of a DNA or other sample, for example, during PCR processing. In some embodiments, detection of the melting point and...
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US20090029377 |
DIAGNOSING FETAL CHROMOSOMAL ANEUPLOIDY USING MASSIVELY PARALLEL GENOMIC SEQUENCING
Embodiments of this invention provide methods, systems, and apparatus for determining whether a fetal chromosomal aneuploidy exists from a biological sample obtained from a pregnant female. Nucleic...
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US20090024333 |
Methods and systems relating to mitochondrial DNA phenotypes
In one aspect, a system includes, but is not limited to, at least one computer program for use with at least one computer system and wherein the computer program includes a plurality of...
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US20090024334 |
Database for analyzing gene function and method of analyzing gene function by DSPA
A method of constructing a gene function database comprising measuring the cell viabilities, against a plural number of drugs at various concentrations, of transformed eukaryotic cells...
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US20090012719 |
SYSTEM AND METHOD FOR IDENTIFICATION OF SYNERGISTIC INTERACTIONS FROM CONTINUOUS DATA
Systems and methods for selecting factors from a continuous data set of measurements are provided. The measurements include values of factors and/or outcomes. Two or more factors that are jointly...
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US20090012720 |
System and Method for Identification of MicroRNA Target Sites and Corresponding Targeting MicroRNA Sequences
A method for determining whether a nucleotide sequence contains a microRNA binding site and which microRNA will bind thereto is provided. For example, in one aspect of the invention, a method for...
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US20090005258 |
Diagnosis of Metastases in Hnscc Tumours
The invention relates to the detection or prediction of metastases of head and neck squamous cell carcinoma (HNSCC) with the use of gene expression profiles. A gene signature has been identified...
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